Enhancing non-Perl bioinformatic applications with #Perl: Building novel, component based applications using Object Orientation, PDL, Alien, FFI, Inline and OpenMP - Archive ouverte HAL https://hal.science/hal-04606172v1

Preprint for the #TPRC2024 talk to be delivered in 10days

submitted by /u/ReplacementSlight413
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This might be Perl/docker-perl#161 but if I filed this in the wrong place, let me know. Keeping these things current is the sort of thing I'd pay for.

Pulling perl images locally give the same warnings for old perl versions, although my local docker will still run them:

$ docker pull perl:5.14 5.14: Pulling from library/perl Image docker.io/library/perl:5.14 uses outdated schema1 manifest format. Please upgrade to a schema2 image for better future compatibility. More information at https://docs.docker.com/registry/spec/deprecated-schema-v1/ 

/usr/bin/docker pull perl:5.14 5.14: Pulling from library/perl [DEPRECATION NOTICE] Docker Image Format v1 and Docker Image manifest version 2, schema 1 support is disabled by default and will be removed in an upcoming release. Suggest the author of docker.io/library/perl:5.14 to upgrade the image to the OCI Format or Docker Image manifest v2, schema 2. More information at https://docs.docker.com/go/deprecated-image-specs/ Warning: Docker pull failed with exit code 1, back off 5.148 seconds before retry. /usr/bin/docker pull perl:5.14 5.14: Pulling from library/perl [DEPRECATION NOTICE] Docker Image Format v1 and Docker Image manifest version 2, schema 1 support is disabled by default and will be removed in an upcoming release. Suggest the author of docker.io/library/perl:5.14 to upgrade the image to the OCI Format or Docker Image manifest v2, schema 2. More information at https://docs.docker.com/go/deprecated-image-specs/ Warning: Docker pull failed with exit code 1, back off 4.06 seconds before retry. /usr/bin/docker pull perl:5.14 5.14: Pulling from library/perl [DEPRECATION NOTICE] Docker Image Format v1 and Docker Image manifest version 2, schema 1 support is disabled by default and will be removed in an upcoming release. Suggest the author of docker.io/library/perl:5.14 to upgrade the image to the OCI Format or Docker Image manifest v2, schema 2. More information at https://docs.docker.com/go/deprecated-image-specs/ Error: Docker pull failed with exit code 1 

 matrix: os: - ubuntu-22.04 perl-version: - '5.8' - '5.10' - '5.12' - '5.14' - '5.16' - '5.18' - '5.20' - '5.22' - '5.24' - '5.26' - '5.28' - '5.30' - '5.32' - '5.34' - '5.36' - 'latest' container: image: perl:${{ matrix.perl-version }} 

GitHub Actions says "upgrade the image to the OCI Format or Docker Image manifest v2, schema 2." · Issue #161 · Perl/docker-perl

Today I started seeing this, which means that all of my Perl testing is borked (thanks for the heads up GitHub). I think you are the source I'm pulling from, but if I'm not, do you know where I sho...

^GitHub

I have an input string that has "comments" in it that are in the form of: everything after a ; is considered a comment. I want to remove all comments from the string and get the raw text out. This is a pretty simple regexp replace except for the fact that ; characters are valid non-comments inside of double quoted strings.

How can I improve the remove_comments() function to handle quoted strings with semi-colons in them correctly?

```perl use v5.36;

my $str = 'Raw data ; This is a full-line comment More data ; comment after it Some data "and a quoted string; this is NOT a comment"';

my $clean = remove_comments($str);

print "Before:\n$str\n\nAfter:\n$clean\n";

sub remove_comments { my $in = shift();

$in =~ s/;.*//g; # Remove everything after the ; to EOL return $in; 

submitted by /u/scottchiefbaker
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Hi,

im looking to put my website written in perl that currently runs locally inside apache out on the internet.

I dont want to host myself, and i dont have lots of spare time to config or money to spend for a vps.

Does anyone have experiences and can recommend a webhoster for maybe 10-15 bucks a month where i can just get a simple interface with ssh, where i can put an index.cgi somewhere(dont care if its in cgi-bin or public_html or something else,

i want something where i can just checkout my git repo thta contains index.cgi in its root and just works.

Thank you in advance!

submitted by /u/throwawaybambo
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I am hopeful someone has done this before as I'm stuck... I have a 3TB disk image file and I am trying to find all the different email addresses that I've used over the past 22 years.

I can use hex editor tools to find them but it takes days to look at the data and pick out even a handful of matches.

I use Perl regularly but I normally scan text files and do non binary file actions. That's easy since I can do a line by line search. But binary seems different.

If I want to search for zeropoint@ (no domain because I've used dozens of ISPs over the years and that's why I am trying to figure this out.) inside the entire 3TB file, what's the best way to do that? I can dump the results to a file and then clean it up but the search part has me stuck

Thank you

submitted by /u/zeropointlabs
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Mo utilities for email.

Changes for 0.02 - 2024-04-26T23:02:53+02:00

• Add tests for error parameters.
• Rewrite the tests so that the functional tests are first and then the errors.