Aligning (and pseudo aligning) biological sequences

Changes for 0.02 - 2024-03-23T20:57:13-06:00

• -provided links to a batch of Alien packages that were developed for this distribution: Command line tools: bowtie2, edlib, hmmer, last, minimap2, MMseqs2, parasail Libraries: edlib, parasail Components: Adapter & Barcode trimming: cutadapt PolyA trimming: cutadapt

Aligning (and pseudo aligning) biological sequences

Changes for 0.01 - 2024-03-23T19:04:38-06:00

• initial commit

Sah schemas related to bool data type

Changes for 0.003 - 2024-02-25

• Rename module/dist Sah-Schema{s,Bundle}-Bool following rename of Sah-Schema{s,Bundle} (for visual clarity and consistency with naming of other bundles).

Perl official company author's are being manipulated

https://www.youtube.com/watch?v=ZDk8y83lyAc
Perl official company author's are being manipulated

submitted by /u/todo_bem
[link] [comments]

Keep playing with Perl programming language authors upload server accounts .

^YouTube

Random hash type objects.

Changes for 0.05 - 2024-03-22T19:10:24+01:00

• Parameter 'num_generated' rewrite to use check_required().
• Update to Data::HashType@0.05 without 'active' parameter.

This is the explanation of what happened to Perl Author : INGENICO

https://www.youtube.com/watch?v=Qw-gBQHa3RY&list=LL&index=1

submitted by /u/todo_bem
[link] [comments]

The Official Perl programming language authors upload server and Perl Archive Network got hacked

The official Perl programming language authors upload server and and Perl Archive Network (cpan.org) got skipped by cranky stalker and here is a journey insi...

^YouTube

Utilities related to mineral supplements

Changes for 0.012 - 2024-03-22

• Add mg-mg-malate, mg-mg-malate-trihydrate.

General purpose command option wrapper

Changes for v0.99.1 - 2024-03-22T09:31:18Z

• Make tabstop configurable in -Mutil::filter module.

Implementation of various techniques used in data compression.

Changes for 0.03 - 2024-03-22

• ADDITIONS
• CHANGES

Asynchronous HTTP Request and Promise

Changes for v0.5.1 - 2024-03-27T16:53:48Z

• Minor correction of undefined variable in HTTP::Promise
• Correcting minor bug in _read_body() in HTTP::Promise

Fork Based Promise with Asynchronous Execution, Async, Await and Shared Data

Changes for v0.4.10 - 2024-03-22T16:50:25Z

Plack search application.

Changes for 0.04 - 2024-03-21T14:13:15+01:00

• Add missing 'image_height' parameter description in doc.
• Add 'image_radius' parameter.
• Add 'name' attribute to search field.

Implementation of various techniques used in data compression.

Changes for 0.02 - 2024-03-21

• ADDITIONS
• CHANGES

ANSI sequence aware column command

Changes for 1.4101 - 2024-03-21T07:50:10Z

• make man page accurate

data pack for Business::ISBN

Changes for 20240321.001 - 2024-03-21T07:16:25Z

• Data update for 2024-03-21

Problem- I have an apache application in which I am using mod_perl module. I want to log few things in a request lifecycle. I am able to do it across multiple files by calling get_logger("nameOfLogger"); and log to the hash that I am maintaining in my appender. But strangely there is one file in which when I call get_logger("nameOfLogger"); it no more has context of previous logs that I have captured before it in other files. What could be the possible cause. does this file needs to be in startup.pl ?

I would really appreciate the help and suggestions since I am stuck on this issue since a day

submitted by /u/FiredNeuron97
[link] [comments]

access GCC compiler builtin functions via XS

Changes for 0.03 - 2024-03-20

• Added more builtins. Added one test file for each builtin function supported. Created benchmarks comparing clz() XS vs PP. Enhanced documentation.

SPVM Language

Changes for 0.989089 - 2023-03-19

• Incompatible Changes
• Internal Changes

https://metacpan.org/recent is showing a reupload of perl-5.38.2 by user INGENICO.

submitted by /u/briang_
[link] [comments]

access GCC compiler builtin functions via XS

Changes for 0.01

• First version, released on an unsuspecting world.

Hey all!

As a recent graduate seeking a junior developer position, I received an invitation for a job interview which included a Perl coding exercise. How can i make my code better? Additionally, are there recommended best practices for documenting my progress on this exercise? I never programmed in perl, so bare with me. Thanks a lot!!

​

here's the task:

- read the data from a .csv file

- store data in one hash

- outputs the data as HTML, sorted by company and within the company by name

​

here is my code:

#!/usr/bin/perl use strict; use warnings; use Text::CSV; my $csv_file = 'Bewerbungstest.csv'; open(my $fh, '<', $csv_file) or die "Could not open file '$csv_file' $!"; my $csv = Text::CSV->new({ binary => 1 }) or die "Cannot use CSV: ".Text::CSV->error_diag(); $csv->header($fh); # Hash Wert my %data_hash; while (my $row = $csv->getline($fh)) { my $pid = $row->[0]; # PID as key my $company = $row->[1]; # Company name as key my $last_name = $row->[2]; # Employee last name my $first_name = $row->[3]; # Employee first name push @{$data_hash{$company}}, [$pid, $last_name, $first_name]; } close($fh); # Sort the company names alphabetically foreach my $company (sort keys %data_hash) { @{$data_hash{$company}} = sort {$a->[1] cmp $b->[1]} @{$data_hash{$company}}; } # HTML Output open(HTML, '>', 'output.html') or die "Could not open file: $!"; print HTML "<html>\n"; print HTML "<head>\n"; print HTML "<title>Employee List</title>\n"; print HTML "</head>\n"; print HTML "<body>\n"; print HTML "<h1>User Liste</h1>\n"; print HTML "<table border='1'>\n"; print HTML "<tr><th>PID</th><th>Company</th><th>Last Name</th><th>First Name</th>\n"; foreach my $company (sort keys %data_hash) { foreach my $entry (@{$data_hash{$company}}) { my ($pid, $last_name, $first_name,) = @$entry; print HTML "<tr>\n"; print HTML "<td>$pid</td>\n"; print HTML "<td>$company</td>\n"; print HTML "<td>$last_name</td>\n"; print HTML "<td>$first_name</td>\n"; print HTML "</tr>\n"; } } print HTML "</table>\n"; print HTML "</body>\n"; print HTML "</html>\n"; close(HTML); print "HTML file erfolgreich generiert\n"; 

submitted by /u/stayin_alive23
[link] [comments]

Data objects for login.

Changes for 0.02 - 2024-03-19T14:01:19+01:00

• Regen example file.
• Rewrite to new Data::HashType@0.04 with added 'valid_from' parameter.

Random hash type objects.

Changes for 0.03 - 2024-03-19T13:59:34+01:00

• Add support for Data::HashType@0.04.

find, build and install the bowtie2 tools

Changes for 0.01 - 2024-03-19T05:13:18-06:00

Data objects for hash type.

Changes for 0.04 - 2024-03-19T13:12:38+01:00

• API CHANGE: Add 'valid_from' and 'valid_to' parameters. 'active' parameter will be removed in future. And 'valid_from' will be required in future.
• Add DESCRIPTION section to doc.

An open source web-based network management tool.

Changes for 2.074000 - 2024-03-19

• NEW FEATURES
• BUG FIXES

I have inherited some perl scripts that I've generally been able to edit well enough with my knowledge from other languages, but I need to make a change that has me stumped.

The user wants the output that happens from this loop to be reversed.

for ($nn=0;$nn<=$range_max;$nn++) { my $range=sprintf("%02d",$nn); $sum_of_A += $A_EACH_RANGE{"$range"}; $sum_of_B += $B_EACH_RANGE{"$range"}; printf("\"\",\"%s\",\"%s\",\"%s\",\"%s\",\"%s\"\n", $scale[$nn], commify($A_EACH_RANGE{"$range"}), commify($B_EACH_RANGE{"$range"}), commify($sum_of_A), commify($sum_of_B)); } 

for ($nn=$range_max;$nn>=0;$nn--) { 

Now I'm stuck, I've made a few attempts like pushing it into an array so I could have the option to output in forward or reverse, but all my attempts just hang with no warnings or errors.

I figure there's a more elegant solution but my Google-fu hasn't helped.

submitted by /u/wirikidor
[link] [comments]

Randal Schwartz is guest on Flosss Weekly 765, mostly for Dart, but he also talks quite a bit about Perl.

One of the interesting management of Dart is that they have people assigned to work shifts to triage and respond to issues so that requestors can get immediate feedback that at least someone saw their issue. I'll let him tell the rest of the story, but it's a good one.

submitted by /u/briandfoy
[link] [comments]

FLOSS Weekly Episode 765: That Ship Sailed… And Sank

This week Jonathan Bennett and Aaron Newcomb talk with Randal Schwartz, the longest running host of FLOSS Weekly, Perl’s biggest cheerleader, and now Dart and Flutter expert. What’s new…

^Hackaday

Hi,

I am using Template::Mustache in a prooted Debian in termux on Android.

It works fine, however it produces this annoying warning:

"Flock not available: 'Function not implemented': continuing in unsafe mode".

As far as I can see it ultimately comes from Path::Tiny when slurping a file.

I have tried to get rid of it with "no warnings" but that did not do the trick.

So how can I suppress this warning?

submitted by /u/ghiste
[link] [comments]

Webservice to connect to Onfido API

Changes for 0.006 - 2023-07-02T15:36:03+00:00

• Add hook

Open a file for shared reading and/or writing

Changes for 4.05 - 2023-07-02

• Fix tests with perl-5.38.0.

Fast, safe DBI connection and transaction management

Changes for 0.59

• Fix for Windows t/load.t failures

Easy form management

Changes for 0.103

• Change: b0ba32ca4ea5d122cd578b0d955777c81cbf7a2f Author: Torsten Raudssus <torsten@raudss.us> Date : 2014-07-07 07:50:06 +0000
• Change: 5b2b7ba52cbf9fb116f04a5d214ef31b671133d9 Author: Torsten Raudssus <torsten@raudss.us> Date : 2014-07-05 21:25:24 +0000
• Change: 776c2531668224036d4a2c16f6485a1da1b842e4 Author: Torsten Raudssus <torsten@raudss.us> Date : 2014-07-05 20:05:49 +0000
• Change: fc3f23639d15f7a790bf06d19b529ad537b29c35 Author: Torsten Raudssus <torsten@raudss.us> Date : 2014-07-05 19:28:49 +0000
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• Change: 43c2c8b4e792258faa1fc776bfec0b84dc206d07 Author: Torsten Raudssus <torsten@raudss.us> Date : 2014-05-10 00:48:05 +0000
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• Change: d97275afa2b0493d3105d53783204ab14525e071 Author: Torsten Raudssus <torsten@raudss.us> Date : 2014-05-02 07:28:59 +0000
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• Change: 18c53f1a9fa827a7be5d84080b4a5268f0dfb5e1 Author: Torsten Raudssus <torsten@raudss.us> Date : 2014-05-01 05:18:38 +0000
• Change: 180e288bfc46ee2b087c09bf58f5e4dde4eedf5b Author: Torsten Raudssus <torsten@raudss.us> Date : 2014-05-01 05:12:19 +0000
• Change: 8c3526e8a889bea6839584b7c557a704324a7dd6 Author: Torsten Raudssus <torsten@raudss.us> Date : 2014-04-30 21:52:08 +0000
• End of releases.

BeLike::GETTY when you build your dists

Changes for 0.114

• Change: 8066ec85b9f727178da7fb28049dc5ccfc8a3b09 Author: Torsten Raudssus <torsten@raudss.us> Date : 2023-05-22 23:45:41 +0000